I have never had a CAI bump the rpm range, I have had a cutout and open headers do that, but never just a CAI. I agree, pull the powerwire, do a reset and see how it drives.
On the powerwire though, did you use the right resistor for the wire?
If you took the throttle body off the truck for cleaning, there is a chance that the small gasket in back that goes between the TB and the intake manifold was pinched or slightly out of place. I would pull that as well just to confirm that it is indeed still seated back there. I had this issue with a vac leak a while ago and swore up and down that it didnt move, turned out it didnt seat right, so its always a good idea just to rule it out.
For the CAI, all the tubes are installed correctly, no gaps in the hoses, no split plastic anywhere? All the sensors are reinstalled in the right locations AND in the right rotation (meaning the IAT sensor isnt turned flat with the air flow its turned perpendicular so the air can travel through the bulb?
The TMT mod, I am assuming that is the torque managment wire? And you are possitive you pulled the right wire?
Not trying to doubt anything that you did, however to figure out why some of these things are going on, you need back track everything you did and just check them one at a time to rule them out.
First two things I would start with, remove the powerwire and if that doesnt work, then reinstall the TM wire.