How much sound are you trying to get? The factory Apline sub is a dual 2ohm voice coil. Means its got 2 hook ups inside (one for each 2ohm coil). If you were to upgrade you would have to get the same or the stock system will be compromised. The factory system sends about 150w RMS to the sub I believe and its no "slouch" for alittle 8". The problem is that the box can't handle much more power if any.
you have 2 options.
1.) Replace with a new box and sub, get a clean signal to an external amp, wire and power said amp and you can have your choice or sub, size and power.
2.) Upgrade the stock sub to a better 8" and get alittle more out of it if its just alittle more that you want.
I did the 2nd, reason being the stock system really isnt that bad. The upgraded sub makes tighter/cleaner bass than the OE sub. You can only really choose between 2 subs with the same dual 2 ohm voice coil for it to be plug and play with some Metra adapters. I went with the pioneer Ib Flat series as it basically drops right into the stock shallow box. Its def an upgrade to my 18 with the apline system and I'm happy with the stock system. Ive also added JBL clubs to the dash (all 3) and JBL club 6x9 in the rear doors, everything plug and play with adapters. Makes a noticable difference in sound!
This is coming from my 14 crew cab which I had upgraded all the speakers, ran a scoche LOC to a pionner 1400w class D amp with a single 12" sub under the rear pass seat (same series Pioneer Ib Flat shallow sub) and that thing kicked pretty hard.
Theres alot of extra work and money that does into changing out the sub system so if you go that route be ready to drop some coin. I went the cheaper route:
$50 amazon sub box for RAM (had to modify to work with the 13" sub)
$70 in welding cable 4 gauge, 100amp breaker and cable ends etc
$30 Soche LOC
$110 Pioneer 12" sub
$100 Pionner 1400w Amp (300w RMS at 4 ohm, or 500w at 2 ohm)
$10 in miscellaneous (spacers for rear seat to fit the sub box)
$370 roughly is what it would cost, plus running all the wiring etc
Just saying it could get expensive depending on what you want!