I had a few weird issues when I was on the Ram TCM calibration and low temperature fluid - locked out of OD when high speed WOT runs and had to slow down to below 75 for it to shift, or a weird slip/jerk shift on the 3-4 shift like the torque converter was slipping in 3rd and suddenly locked up when shifting to 4th. Another weird thing it would do is when going WOT from a dig, it would shift at 6200 (as tuned) but when doing a downshift WOT run, it would shift well under 6K.
I am running a used 8HP70 that was flooded or sat outside ruining all of the fluid so I couldn't clearly pinpoint the cause of those unique issues (fluid or bad transmission or cottage cheese within the fluid passages, etc.) I recently flashed the challenger scat pack configuration to enable manual shifting, fixing the first issue, but the second issue immediately went away so that is not temperature related. When researching how to tune this thing, I discovered all of the shift tables that it uses to decide when/how to shift.
For my 1st issue, the OD lockout, this is 100% a temperature issue. The TCM uses tables (shift IDs) 30/31 for warmup which enables the 6-7 shift at 6600 RPM output shaft speed (6600 engine RPM) for all throttle positions, which means it won't shift from 6 to 7th unless I am going 164 MPH at 6600 RPM when in the warmup mode. The 7-8th shift is set at 7857 OSS (6600 engine RPM) for all throttle positions as well. So that is a low temperature issue but it only engages those shift IDs when going WOT above 80 MPH, under normal acceleration and driving, that condition wouldn't exist.
For my setup (3600 stall), the jerky shift was caused by the torque converter clutch engagement as suspected and fixed when I changed calibrations to sport mode so I don't have that issue anymore - it was not temperature related.
My 3rd issue, WOT shift points for varying conditions. There are 4 tables that control shift points when downshifting and going WOT and those were not set at 6200 RPM like the standard tables were, which is why it was short shifting. Again, this was not temperature related.
For the low temperature concerns, the only issues affected by temperature can be solved by changing the shift points of those warmup tables, I believe. I haven't experienced any other issues, the transmission shifts great and is a blast to drive.
As for the coolant ports on the factory thermostatic housing, yes, that is JB weld. I tapped those holes and put a set-screw in there to block the passages. The JB Weld is simply backup, the set screw blocks those passages.