If this was to me, I don’t think it will. I just think items on the motor will 1 day go out, and if they aren’t needed, delete them.
It wasn't directed to you, but I get your thought process. However, if it were me I wouldn't delete unless I absolutely had to. If the truck is perfectly fine as-is, then there's no reason to delete it. Maybe IF it has a failure one day, and IF that failure cost more than the delete, and IF I could do it without being hassled for it then I would. This is coming from someone who has deleted both of my Rams. I only did it as a necessity and not as preventative maintenance.
It doesn't matter if it's a dually or not in regards to 35's. If you intend to haul frequently with it, 35's aren't a good choice. Not only might they increase wear on the truck (in my case), it's going to be almost impossible to level tow a gooseneck or fifth wheel. If you don't level tow the trailer, you can cause other problems. You can probably squeak by with a bumper pull trailer with an extended receiver but for bigger loads I'd avoid it.
89k miles is nothing on a well maintained Cummins. It's not even broken in yet. If you're worried about the mileage and chance of an emissions failure at 89k miles... well that's a crap shoot. More importantly is how the truck was used over how many miles are on it. If it were worked, then chances are the DPF, etc... are going to be in better shape than one that was granny driven around town. It could go 200-300k miles. There's no way to know for sure. My 3500 failed likely because I daily drove it and only towed my 5th wheel with it infrequently on the weekends. It didn't get worked enough.
At the end of the day you have to understand that there are some additional considerations when moving to a diesel. And some of those mean you have to pay to play.