Yeah and I cant imagine lowered applications run into the same kinds of bumps that we do!
So in general you adjust the front to back location of your axle with the lower control arms and your caster with your upper control arms. Your axle looks like its in the right spot front to back and the caster seems to be set to align your pinion with the driveshaft, which is all good.
The problem with going high on coil spring axles is shown in your first picture where you can see the spring bowed back. As you rotate the axle back to align with the higher angle on the drive shaft your coil spring buckets rotate back as well so the lower spring pad is now angled toward the back of the truck instead of straight up. Its not a huge problem as long as the springs aren't touching anything else but the ride will be softer as part of the spring is pushing forward and not up. You should also be a little careful in large droop situations as the axle swings forward and since your springs are already pointing a little backward they will want to unseat more easily.
As far as I know the only 2 ways to fix this are to cut the lower mounts off the axle tube, twist them forward, and reweld but by the time youre talking about welding i vote for coilovers. The other option is to install wedges. I haven't seen them specifically for our trucks but this is a well know issue for the jeep JK.
Synergy Jeep JK Rear Coil Wedges
Also as a last question for my own curiosity they did provide a bracket for the rear track bar right? Either a frame side drop or axle side lift bracket? If you look into custom lift options you should probably get an adjustable trackbar so you can fine tune your axle location side to side.