I had water issues under the rear passenger seat on my 2013 CC. As stated by others, water can come in through rear slider, even if weep hole is clean, if too much water is directed on rear window.
My problem was the 3rd brake light. Silicone solved it.
I only mention the rear window because after I put a new gasket on 3rd light, I was pouring a fair amount of water down rear from the truck roof. I found water inside. So I redid 3rd light. Same problem. I then silicone. That's when I discovered water can come in rear slider if it's drenched from above. But regular heavy rain doesn't cause it to leak.
By the time I was done, and figured that out, I'll never be able to change a bulb in that third light without a pry bar. LOL