Your truck isn't exactly a 3rd Generation (2002 - 2008) so I am only going to provide this general observation.
Not all electrical issues are with fuses - grounds tend to also cause their own share of grief, particularly when either shared or when passing through a bolted connection. I did electrical designs and 3rd level tech support for heavy trucks for more than 20 years, and the stories of the un-solvable electrical gremlins that were finally solved by checking grounds are too numerous for me to remember. (The one I do remember involved a military truck whose lights would all come on whenever the brakes were applied...and that involved 4 bad grounds....)
The 3rd Generation has a key system ground (up to 20 different systems use this ground) bolted to the driver's fender - without a direct wire return path to battery negative. A little corrosion on the bolted joint is enough to cause issue. I do not know how the grounds differ on newer trucks, so I only offer this as an addiitonal reason for looking.
Look at any under-hood grounds, particularly any bolted to fenders - and any that do not have a cable going back to battery negative should be checked for corrosion by removing the fasteners, and then reassembling with a thin coat of grease (non-dielectric, of course ).
Eric