I just installed a the same UPR catch can that I ordered from Nick back in mid September. Fit and finish are awesome. I recommend getting the drain valve if you have not ordered it yet.
Anyway, I had the same question as you after looking at all the pictures and install instructions. It just didn't seem right, and not to mention looked like absolute crap with the hoses routed that way. So, I called UPR and asked.
I was informed that they recently changed the design of the catch can internals and now the new design works with the hoses routed either way.
Sure enough when it arrived, the diffuser looks different from that picture. It is NOT the "staircase" design. It has a circular sintered metal coalescer that sits more flush and even across the head of the catch can. So I installed it with the hoses uncrossed as UPR directly told me would be fine.
After two tanks of fuel, I drained it while I was filling up and sure enough it is working fine. Not a whole lot of oil after that kind of mileage but enough to see that it is working. Dare I say the truck sounds quieter on start ups since I have installed it. I had about 62K when it went on. Trying to max out the trucks longevity was the main reason I installed it. Any preventive thing I figure couldn't hurt and for what I paid for it I am more than pleased with what I am seeing and hearing from the truck. Good luck!